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Dense optical flow software to quantify cellular contractility.
Scalzo S, Afonso MQL, da Fonseca NJ Jr, Jesus ICG, Alves AP, Mendonça CATF, Teixeira VP, Biagi D, Cruvinel E, Santos AK, Miranda K, Marques FAM, Mesquita ON, Kushmerick C, Campagnole-Santos MJ, Agero U, Guatimosim S. Scalzo S, et al. Among authors: afonso mql. Cell Rep Methods. 2021 Jul 7;1(4):100044. doi: 10.1016/j.crmeth.2021.100044. eCollection 2021 Aug 23. Cell Rep Methods. 2021. PMID: 35475144 Free PMC article.
PFstats: A Network-Based Open Tool for Protein Family Analysis.
Fonseca-Júnior NJ, Afonso MQL, Oliveira LC, Bleicher L. Fonseca-Júnior NJ, et al. Among authors: afonso mql. J Comput Biol. 2018 May;25(5):480-486. doi: 10.1089/cmb.2017.0181. Epub 2018 Feb 26. J Comput Biol. 2018. PMID: 29481292
PDBe and PDBe-KB: Providing high-quality, up-to-date and integrated resources of macromolecular structures to support basic and applied research and education.
Varadi M, Anyango S, Appasamy SD, Armstrong D, Bage M, Berrisford J, Choudhary P, Bertoni D, Deshpande M, Leines GD, Ellaway J, Evans G, Gaborova R, Gupta D, Gutmanas A, Harrus D, Kleywegt GJ, Bueno WM, Nadzirin N, Nair S, Pravda L, Afonso MQL, Sehnal D, Tanweer A, Tolchard J, Abrams C, Dunlop R, Velankar S. Varadi M, et al. Protein Sci. 2022 Oct;31(10):e4439. doi: 10.1002/pro.4439. Protein Sci. 2022. PMID: 36173162 Free PMC article.